*KEY            *VALUE
BLAST_DIR       path/to/blast/blast-2.2.26/bin
CATFAM_DIR      path/to/catfam
EMBOSS_DIR      path/to/EMBOSS/EMBOSS-6.6.0/emboss
DETECT_DIR      path/to/DETECTv2
EFICAz_DIR      path/to/EFICAz2.5.1
EnzDP_DIR       path/to/EnzDP/enzdp.py
PRIAM_DIR       path/to/PRIAM/PRIAM_search.jar
PRIAM_db        path/to/PRIAM/PRIAM_JAN18
SEQUENCE_FILE   path/to/fasta_file.fa
DATABASE        path/to/Database
USER_def_reax   path/to/USER_defined_reactions.out
WARNING_mets    path/to/WARNING_mets_to_allow.out
CPLEX_PATH      path/to/cplex
FRAMED_PATH     path/to/Architect/dependency
CARVEME_PATH    path/to/Architect/dependency/CarveMe