Gene Details


gene name: rpsT


locus tag k12ECK0024 Crenarchaeota Euryarchaeota Nanoarcheota Alphaproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Epsilonproteobacteria Cyanobacteria Actinobacteridae Firmicutes Spirochaetes others Protist Microsporidia Fungi Metazoa Plantae
information on phylogenetic profile
locus tag mg1655b0023
locus tag w3110JW0022
gene name k12rpsT
locus namerpsT
synonyms of locus namesup(s20), supS20

scop id46992
superfamilyRibosomal protein S20
pfam idPF01649
pfam domainRibosomal protein S20
tigrfam idTIGR00029
nameS20
functionribosomal protein S20

swissprot nameRS20_ECOLI
description30S ribosomal protein S20.
seq length86
fastaseq

go idGO:0005737; GO:0009281; GO:0003735; GO:0006412
go termcytoplasm; cytosolic ribosome (sensu Bacteria); structural constituent of ribosome; protein biosynthesis

gene product description30S ribosomal subunit protein S20
comment gene product description
evidenceE
context
gene product descStructural component
cell locationCytoplasmic
featuresCDS

functional category codeJ
functional categoryTranslation, ribosomal structure and biogenesis

reference #1Mapping ribosomal protein S20-16 S rRNA interactions by mutagenesis.

Cormack R., Mackie G. (J Biol Chem. 1991 Oct 5; 266(28):18525-9)
reference #2Chemical evidence for domain assembly of the Escherichia coli 30S ribosome.

Weitzmann C., Cunningham P., Nurse K., Ofengand J. (FASEB J. 1993 Jan; 7(1):177-80)
reference #3Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20.

Rydén-Aulin M., Shaoping Z., Kylsten P., Isaksson L. (Mol Microbiol. 1993 Mar; 7(6):983-92)
reference #4Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry.

Arnold R., Reilly J. (Anal Biochem. 1999 Apr 10; 269(1):105-12)
reference #5All-atom homology model of the Escherichia coli 30S ribosomal subunit.

Tung C., Joseph S., Sanbonmatsu K. (Nat Struct Biol. 2002 Oct; 9(10):750-5)
reference #6Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S., Van Roey P., Agrawal R., Harvey S., Sali A., Chapman M., Frank J. (Cell. 2003 Jun 13; 113(6):789-801)
reference #7Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element.

Mackie G. (Nucleic Acids Res. 1986 Sep 11; 14(17):6965-81)
reference #8Characterization of the ileS-lsp operon in Escherichia coli. Identification of an open reading frame upstream of the ileS gene and potential promoter(s) for the ileS-lsp operon.

Kamio Y., Lin C., Regue M., Wu H. (J Biol Chem. 1985 May 10; 260(9):5616-20)
reference #9Nucleotide sequence of the gene for ribosomal protein S20 and its flanking regions.

Mackie G. (J Biol Chem. 1981 Aug 10; 256(15):8177-82)
reference #10Primary structure of protein S20 from the small ribosomal subunit of Escherichia coli.

Wittmann-Liebold B., Marzinzig E., Lehmann A. (FEBS Lett. 1976 Sep 15; 68(1):110-4)

phylogenetic profile
 
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 75
82 74 74 62 68 65 68 67 67 71 58 58 56 50 50 62 63 65 71 70
70 61 72 61 52 1 1 63 52 87 87 87 79 79 94 98 98 75 75 1
50 1 53 50 51 1 53 1 61 58 66 51 1 51 51 50 75 75 75 73
69 65 70 73 1 59 1 51 64 63 63 63 63 63 1 1 1 57 55 1
1 52 71 54 52 52 52 52 52 56 57 57 62 61 61 62 62 61 61 54
55 103 85 106 106 110 82 144 168 168 167 127 102 102 132 98 136 146 101 97
97 165 165 165 121 151 120 117 120 116 92 97 98 90 92 148 149 149 61 51
52 50 50 50 51 1 51 1 54 66 1 65 53 62 51 50 58 1 1 58
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1