Gene Details


gene name: fixC


locus tag k12ECK0044 Crenarchaeota Euryarchaeota Nanoarcheota Alphaproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Epsilonproteobacteria Cyanobacteria Actinobacteridae Firmicutes Spirochaetes others Protist Microsporidia Fungi Metazoa Plantae
information on phylogenetic profile
locus tag mg1655b0043
locus tag w3110JW0042
gene name k12fixC
locus namefixC
synonyms of locus nameyaaS

scop id51905
superfamilyFAD/NAD(P)-binding domain
pfam idPF01266
pfam domainFAD dependent oxidoreductase
TIGRFAMno information

swissprot nameFIXC_ECOLI
descriptionProtein fixC.
seq length428
fastaseq

go idGO:0042413
go termcarnitine catabolism

gene product descriptionpredicted oxidoreductase with FAD/NAD(P)-binding domain
comment gene product descriptionpotential role in carnitine metabolism
evidenceC
context
gene product descCarrier, predicted
cell locationCytoplasmic
featuresCDS

functional category codeC
functional categoryEnergy production and conversion

reference #1The fix Escherichia coli region contains four genes related to carnitine metabolism.

Eichler K., Buchet A., Bourgis F., Kleber H., Mandrand-Berthelot M. (J Basic Microbiol. 1995; 35(4):217-27)

phylogenetic profile
 
233 245 198 205 1 1 65 78 71 87 72 74 192 68 51 63 243 256 1 1
1 1 1 1 1 1 1 1 1 302 72 66 1 1 1 89 97 93 242 82
81 100 248 251 1 1 1 239 1 98 98 98 101 101 98 112 116 1 91 1
100 1 54 55 64 1 1 112 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 94 1 1 1 1 102 1 803 797 799 1 99 97 1 1 1 1 87 87
1 726 722 726 113 798 798 1 92 102 1 96 97 98 98 1 1 1 1 1
1 1 1 1 1 1 1 1 1 368 1 1 1 218 1 1 1 1 1 1
87 81 85 76 92 91 104 122 100 90 88 87 99 94 1 93 86 1 1