Gene Details


gene name: dapB


locus tag k12ECK0032 Crenarchaeota Euryarchaeota Nanoarcheota Alphaproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Epsilonproteobacteria Cyanobacteria Actinobacteridae Firmicutes Spirochaetes others Protist Microsporidia Fungi Metazoa Plantae
information on phylogenetic profile
locus tag mg1655b0031
locus tag w3110JW0029
gene name k12dapB
locus namedapB
synonyms of locus name

scop id55347; 51735
superfamilyGlyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain; NAD(P)-binding Rossmann-fold domains
pfam idPF01113; PF05173
pfam domainDihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus
tigrfam idTIGR00036
namedapB
functiondihydrodipicolinate reductase

swissprot nameDAPB_ECOLI
descriptionDihydrodipicolinate reductase (EC 1.3.1.26) (DHPR).
seq length273
fastaseq

go idGO:0005737; GO:0009274; GO:0009089
go termcytoplasm; cell wall (sensu Bacteria); lysine biosynthesis via diaminopimelate

gene product descriptiondihydrodipicolinate reductase
comment gene product description
evidenceE
context
gene product descEnzyme
cell locationCytoplasmic
featuresCDS

functional category codeE
functional categoryAmino acid transport and metabolism

reference #1Dihydrodipicolinic acid reductase.

Tamir H., Gilvarg C. (J Biol Chem. 1974 May 25; 249(10):3034-40)
reference #2Nucleotide sequence and expression of the Escherichia coli dapB gene.

Bouvier J., Richaud C., Richaud F., Patte J., Stragier P. (J Biol Chem. 1984 Dec 10; 259(23):14829-34)
reference #3Multiple regulatory signals in the control region of the Escherichia coli carAB operon.

Bouvier J., Patte J., Stragier P. (Proc Natl Acad Sci U S A. 1984 Jul; 81(13):4139-43)
reference #4Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase.

Scapin G., Blanchard J., Sacchettini J. (Biochemistry. 1995 Mar 21; 34(11):3502-12)
reference #5Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase in complex with NADH and the inhibitor 2,6-pyridinedicarboxylate.

Scapin G., Reddy S., Zheng R., Blanchard J. (Biochemistry. 1997 Dec 9; 36(49):15081-8)

phylogenetic profile
 
1 1 1 1 184 1 194 194 183 176 161 167 1 1 1 1 1 1 1 80
87 89 86 68 88 1 90 90 95 105 95 95 103 1 1 208 205 197 209 220
213 171 205 229 113 122 124 208 169 271 271 271 282 280 301 302 301 274 266 94
103 77 81 84 81 104 93 94 218 182 239 161 149 117 118 167 101 99 99 101
97 98 146 129 144 97 1 87 89 101 104 103 104 103 1 1 1 1 1 1
1 1 92 1 104 103 105 103 105 1 1 86 86 86 1 1 1 1 1 139
1 303 207 213 223 239 79 423 506 504 504 356 80 82 361 302 349 409 304 324
312 466 461 466 339 506 506 326 313 315 170 153 152 136 136 406 406 406 171 83
81 84 84 84 95 94 72 96 1 1 94 169 83 125 1 1 180 1 1 180
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1