Bacteriome.org

Gene Details

gene name: cydA

Phylogenetic Profile Distribution

locus tag k12	ECK0721	information on phylogenetic profile
locus tag mg1655	b0733
locus tag w3110	JW0722
gene name k12	cydA
locus name	cydA
synonyms of locus name	cyd-1

SCOP	no information
pfam id	PF01654
pfam domain	Bacterial Cytochrome Ubiquinol Oxidase
TIGRFAM	no information

swissprot name	CYDA_ECOLI
description	Cytochrome d ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Cytochrome d\|ubiquinol oxidase subunit I) (Cytochrome bd-I oxidase subunit I).
seq length	522
fastaseq	MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFG INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR LGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVA QVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE SGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSV DTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRY TPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKK WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICG LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR

go id	GO:0009274; GO:0019866; GO:0009054
go term	cell wall (sensu Bacteria); inner membrane; electron acceptor activity

gene product description	cytochrome d terminal oxidase, subunit I
comment gene product description
evidence	E
context
gene product desc	Carrier
cell location	Integral Membrane Protein
features	CDS

functional category code	C
functional category	Energy production and conversion

reference #1	Electron flow and heme-heme interaction between cytochromes b-558, b-595 and d in a terminal oxidase of Escherichia coli. Hata-Tanaka A., Matsuura K., Itoh S., Anraku Y. (Biochim Biophys Acta. 1987 Sep 10; 893(2):289-95)
reference #2	Location of heme axial ligands in the cytochrome d terminal oxidase complex of Escherichia coli determined by site-directed mutagenesis. Fang H., Lin R., Gennis R. (J Biol Chem. 1989 May 15; 264(14):8026-32)
reference #3	Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product. Cotter P., Chepuri V., Gennis R., Gunsalus R. (J Bacteriol. 1990 Nov; 172(11):6333-8)
reference #4	Epitopes of monoclonal antibodies which inhibit ubiquinol oxidase activity of Escherichia coli cytochrome d complex localize functional domain. Dueweke T., Gennis R. (J Biol Chem. 1990 Mar 15; 265(8):4273-7)
reference #5	Analysis of the topology of the cytochrome d terminal oxidase complex of Escherichia coli by alkaline phosphatase fusions. Newton G., Yun C., Gennis R. (Mol Microbiol. 1991 Oct; 5(10):2511-8)
reference #6	The nucleotide sequence of the cyd locus encoding the two subunits of the cytochrome d terminal oxidase complex of Escherichia coli. Green G., Fang H., Lin R., Newton G., Mather M., Georgiou C., Gennis R. (J Biol Chem. 1988 Sep 15; 263(26):13138-43)
reference #7	Beta-galactosidase gene fusions as probes for the cytoplasmic regions of subunits I and II of the membrane-bound cytochrome d terminal oxidase from Escherichia coli. Georgiou C., Dueweke T., Gennis R. (J Biol Chem. 1988 Sep 15; 263(26):13130-7)

phylogenetic profile


1	1	1	1	64	157	1	1	1	1	247	1	86	1	1	1	71	86	1	1
297	254	255	283	283	1	283	283	277	298	290	283	339	1	1	608	1	1	259	616
616	587	199	205	231	232	235	200	209	645	642	645	703	703	191	1	1	1	194	244
236	1	1	1	1	260	229	1	414	322	346	419	418	1	1	442	335	335	335	156
340	324	1	1	1	303	281	294	302	352	352	352	352	352	1	1	1	1	1	1
1	1	150	1	144	144	144	144	144	251	251	1	1	1	1	1	1	1	1	1
1	761	1	1	1	1	596	900	1040	1040	1040	701	639	640	715	701	738	900	253	263
257	1003	1004	1003	773	1040	1038	800	795	796	1	625	627	1	1	916	916	916	332	420
400	224	224	224	214	226	221	333	1	1	256	265	369	1	1	1	1	1	1	1
1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1